PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G141900.1
Common NameB456_005G141900, LOC105794201
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 365aa    MW: 40429.6 Da    PI: 6.6192
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G141900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-313892155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprl+WtpeLH+rFveav+qLGG++kAtPk++++++++ gLtl+h+kSHLQk+Rl
  Gorai.005G141900.1 38 KPRLKWTPELHQRFVEAVNQLGGPDKATPKNLMRVIGISGLTLYHLKSHLQKFRL 92
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.8473595IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-293694IPR009057Homeodomain-like
SuperFamilySSF466891.51E-153793IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-223893IPR006447Myb domain, plants
PfamPF002491.5E-74090IPR001005SANT/Myb domain
PfamPF143793.2E-23136182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSFSFLLPSA CLSYTTQNLA LHNMQNQDMN LVLSTDAKPR LKWTPELHQR FVEAVNQLGG  60
PDKATPKNLM RVIGISGLTL YHLKSHLQKF RLGKSQQTEI CLSDNLDDYR EIQSGNKDLS  120
SDTSDGTHKL MNESSKIAQA LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ  180
ETLAGYTSSS VGVELAKAEL SQLVSMVNTG CTSSSLSELT EIGGSSLKQM ERKPMKGTIC  240
SRESSLTSSE SSGRTEDDEP PKNENICNRK SNTCFEFNFM EIYPEKKGLM SGSSNEVSGK  300
KRSGTNICDG ICVDQPVAKR LELPEEETGC GLRKSGLLGS FDLNNQYQND NESSPKAIDL  360
NCKE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5789864e-55JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478701.10.0PREDICTED: uncharacterized protein LOC105794201 isoform X1
TrEMBLA0A0D2NCL80.0A0A0D2NCL8_G
STRINGVIT_01s0026g02550.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.21e-82G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]